OK. The good news is you are pretty close if you were getting it to try to start or if it ran at all.
The reason the engine won't run is because it is not timed correctly. The best play now is to pause your efforts on the car until you are equipped to retime it using the right procedure and equipment.
This is one of those jobs that you simply cannot do at all without using the required tools. It's EASY if you get the stuff and go through the required process, but there is no other way.
Kind of like setting ignition timing on an older gasoline engine with a distributor. Have you done that in the past? If so, this will sound similar. It's a job that is easy to do if you have the necessary tool (a timing light). But if you don't have that tool, then you have no way to get it done and you are just working blind.
The pump timing tools are easy to find and extremely cheap. Here is a good set on ebay for 35 bucks with free shipping. This has everything you need including the dial indicator itself.
Timing Indicator Set for the Bosch Diesel Injection Pump. This tool set makes the job of precisely setting of the Bosch diesel fuel injection pump easy. For use on Bosch diesel injection systems especially for VW and Audi engines.
www.ebay.com
There are also several folks on the diesel listserve and forum and Facebook groups who are happy to loan these tools out at no cost. Don't let the lack of the tools be the obstacle to getting it done.
The comment above about a "wacky voodoo dance" is wrong, and I'm not sure why that poster said it, since I know for a fact he succeeded with this process in the past so he should be able to attest that it's not that hard (no job is fun with frozen fingers, you can't blame that on the car

). It's a simple procedure that is used on every diesel engine with the Bosch VE pump, all around the world for the last 60 years. Every tractor, generator, old Cummins Dodge pickup truck, every Volkswagen and Audi and Peugeot and Volvo. Super straightforward and an everyday process in any diesel shop. Again like setting ignition timing on a gas burner..... nothing to it, once you grasp what you are trying to do and how to do it.
You just need to have the tools and the instructions, and then take it step by step without cutting corners. Then like magic, the engine will fire right up cleanly and run perfectly. (Assuming it doesn't have internal damage from the ether. Just hope for the best on that though. At this point you have nothing to lose by timing it and seeing what happens.)
Ready to help with every step here anytime you need it. With the time and $ you've put in already rebuilding and replacing that pump, trust me that this is going to be the easy part, once you have the right equipment.